What is omXplore?

omXplore is a Bioconductor package that provides functions for the visualization and the statistical analysis of proteomics data. It can deal with common Bioconductor formats such as as Msnset, QFeatures, MultiAssayExperiment.

It is also possible to write your own plot modules so as to embed it into the GUI of omXplore.

Evolving the DAPAR package plots towards Shiny modules.

Getting started

See the omXplore introduction to get started with the visualization of data.

License

The omXplore code is provided under a permissive Artistic 2.0 license. The documentation, including the manual pages and the vignettes, are distributed under a CC BY-SA license.

Installation

To install this package, start R (version “4.3”) and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("omXplore")

This will also install dependencies.

It is also possible to install omXplore from Github:

library(devtools)
install_github('prostarproteomics/omXplore')

For older versions of R, please refer to the appropriate Bioconductor release.