Convert to enriched MultiAssayExperiment

The resulting object is an instance of the MultiAssayExperiment class.

convert_to_mae(obj)

MSnSet_to_mae(obj)

matrix_to_mae(obj)

df_to_mae(obj)

Compute_CC(obj)

QFeatures_to_mae(obj)

SE_to_mae(obj)

MAE_to_mae(obj)

Check_se_Consistency(obj)

list_to_se(ll)

Check_List_consistency(ll)

listOfLists_to_mae(obj, colData = NULL)

listOfSE_to_mae(obj)

Check_MSnSet_Consistency(obj)

matrix_to_se(obj)

df_to_se(obj)

MSnSet_to_se(obj)

Build_X_CC(se)

listOfMSnSet_to_mae(obj)

listOfmatrix_to_mae(obj)

listOfdf_to_mae(obj)

Arguments

obj: An object compliant with the formats accepted by omXplore
ll: A list
colData: A data.frame()
se: AN instance of the class SummarizedExperiment

Value

An enriched instance of the class MultiAssayExperiment

An instance of SimpleList

An enriched instance of the class MultiAssayExperiment

A boolean(1)

An enriched instance of the class SummarizedExperiment

A boolean(1)

An enriched instance of the class MultiAssayExperiment

A boolean(1)

An enriched instance of the class SummarizedExperiment

An enriched instance of the class MultiAssayExperiment

Examples

if (FALSE) { # \dontrun{

#-------------------------------------------
# Conversion of a MultiAssayExperiment instance
#-------------------------------------------
data(miniACC, package = 'MultiAssayExperiment')
convert_to_mae(miniACC)
} # }