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BuildColorStyles()
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Build color style for DT tables |
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Build_enriched_qdata()
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Builds enriched assay with cell metadata info |
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FormatDataForDT()
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Constructs a dataset suitable to use with the module format_DT. |
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GetPkgVersion()
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Package version |
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SE_Compatibility_with_Prostar_1.x() MAE_Compatibility_with_Prostar_1x()
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Convert datasets exported by the package Prostar |
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get_adjacencyMatrix() get_design() get_group() get_metacell() get_cc() get_parentProtId() get_colID() get_type() get_pkg_version()
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Accessors functions |
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custom_metacell_colors() colorLegend_ui() colorLegend_server() colorLegend()
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Color legend for DaparToolshed |
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convert_to_mae() MSnSet_to_mae() matrix_to_mae() df_to_mae() Compute_CC() QFeatures_to_mae() SE_to_mae() MAE_to_mae() Check_se_Consistency() list_to_se() Check_List_consistency() listOfLists_to_mae() listOfSE_to_mae() Check_MSnSet_Consistency() matrix_to_se() df_to_se() MSnSet_to_se() Build_X_CC() listOfMSnSet_to_mae() listOfmatrix_to_mae() listOfdf_to_mae()
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Convert to enriched MultiAssayExperiment |
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omXplore_corrmatrix_ui() omXplore_corrmatrix_server() corrMatrix() omXplore_corrmatrix()
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Displays a correlation matrix of the quantitative data of a numeric matrix. |
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customChart()
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Customised resetZoom Button of highcharts plots |
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customExportMenu()
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#' @title Customised contextual menu of highcharts plots |
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omXplore_density_ui() omXplore_density_server() densityPlot() omXplore_density()
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Displays a correlation matrix of the quantitative data of a numeric matrix. |
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omXplore_pca_ui() omXplore_pca_server() omXplore_pca() wrapper_pca() plotPCA_Eigen() plotPCA_Var() plotPCA_Ind() plotPCA_Eigen_hc()
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Bar plot of missing values per lines using highcharter. |
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view_dataset_ui() view_dataset_server() view_dataset()
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Bar plot of missing values per lines using highcharter. |
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extFoo1_ui() extFoo1_server() extFoo1() extFoo2_ui() extFoo2_server() extFoo2()
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External module example |
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formatDT_ui() formatDT_server() formatDT()
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formatDT_ui and formatDT_server |
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globals()
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Global variables |
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omXplore_intensity_ui() omXplore_intensity_server() omXplore_intensity() boxPlot() violinPlot()
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Displays different intensity plots. |
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is.listOf()
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Checks the class of a list's slots |
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addModules() listShinyApps() listPlotModules()
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Shiny modules used by omXplore |
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omXplore_heatmap_ui() omXplore_heatmap_server() omXplore_heatmap() heatmapD() mv.heatmap() heatmapForMissingValues()
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Displays a correlation matrix of the quantitative data of a numeric matrix. |
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omXplore_tabExplorer_ui() omXplore_tabExplorer_server() omXplore_tabExplorer()
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Explore MultiAssayExperiment objects. |
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SampleColors() ExtendPalette() GetColorsForConditions()
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Palette for samples. |
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buildGraph() display.CC.visNet() plotCCJitter() GetCCInfos()
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Display a CC |
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pkgs.require()
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Loads packages |
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omXplore_variance_ui() omXplore_variance_server() CVDist() omXplore_variance()
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Variance plot |
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metacell.def() Parent() Children() GetMetacellTags()
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Quantitative metadata vocabulary for entities |
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sub_R25
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Feature example data |
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vdata
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Feature example data |